Wholeheartedly agree with Mick's terrific post & info

.
Also second Mick on shortcuts. E.g. my (Haynes) manual tells you to drop the gearbox oil, and remove the swingarm before removing the 'box. Absolutely unnecessary! The whole gearbox can be removed with the swingarm on - why mess with s-arm bearings etc. if they are perfectly fine? Ditto the rear bevel drive box - just remove the wheel, the brake caliper, torque arm and the ABS sensor (or speedo drive). Plug the orifice unless you're gonna drain the bevel anyway to keep the goo inside!
I used a trolley jack to support the 'box with a helper and used that to ease the whole 'box, shaft etc. as one piece off the motor.
Don't worry about actually removing the subframe - it'll pivot around the front bolts on the engine and hang it from the ceiling - that way you can leave as much electrics and stuff connected as possible.
Only other thing I can think of... clutch centreing and getting the box lined up and back on. I found the easiest way, was the way I'd done cars in the past - put the clutch system together with the bolts done up just enough so it lightly grips the friction plate. Centre it by eye as best you can - use a 3/8" extension or similar as a rough centring tool. This 'loose fit' then allows you some 'wiggle', to get the 'box shaft into the friction plate centre splines, and the 'box as a whole lined up and back on. Having the 'box in gear so you can rotate the shaft by turning the bevel drive for the rear wheel helps line the teeth up and slot it home.
After this - put in the housing bolts to secure the 'box back onto the engine to keep it all together. Then, you can access the bolts to tighten up the clutch assembly via the starter motor hole (you can mark each one with a marker pen or similar as you do them to make sure you get them all torqued up properly). It's not the recommended method, but once you've got the 'box on once, you really don't want to fight with it any more - this method meant I only had to do one round of wrestling with the 'box/s-arm lump. Again - a trolley jack helps to get the box in the right position/height and take some of the weight while you get it lined up and back on.
FWIW (as Mick suggests), we only changed the friction plate, as my mate was on a tight budget, along with the slave and the corroded hydraulic line - oh, and the clutch bolts). I'd never done one before (and mate was there as a pair of hands, knowing a lot less even than me!) so we took our time, read the Haynes and then looked at everything carefully to determine what to do (and work out what steps we
didn't need to do!).
Whatever bolts and fittings could be secured back in place with the item they connect to, or back into the frame lug etc. were done as we went along so that it was easier to re-assemble correctly.
Doing it this way, it took 5 hours to tear it down (one evening after work), and 6 hours to put it all back and test it (another evening, 3 days later after parts arrived). Not as quick no doubt as the pro's, but rushing would have been daft, and we were well happy with the result.
Hope this helps! Good luck, and I still hope for your sake that it's just the slave!
G.